Adam Officer

Affiliations

Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, USA.
Division of Biomedical Informatics, University of California, San Diego, La Jolla, CA, USA.

ORCID: http://orcid.org/0000-0003-2913-6051

Publications (20)

Deciphering cell-cell interactions and communication from gene expression.

Nature reviews. Genetics

Avec: Erick Armingol , Adam Officer , Olivier Harismendy , Nathan E Lewis

Stromal remodeling regulates dendritic cell abundance and activity in the tumor microenvironment.

Cell reports

Avec: Athanasios Papadas , Gauri Deb , Alexander Cicala , Adam Officer , Chelsea Hope , Adam Pagenkopf , Evan Flietner , Zachary T Morrow , Philip Emmerich , Joshua Wiesner , Garrett Arauz , Varun Bansal , Karla Esbona , Christian M Capitini , Kristina A Matkowskyj , Dustin A Deming , Katerina Politi , Scott I Abrams , Olivier Harismendy , Fotis Asimakopoulos

Integrated Molecular Characterization of Intraductal Papillary Mucinous Neoplasms: An NCI Cancer Moonshot Precancer Atlas Pilot Project.

Cancer research communications

Avec: Alexander Semaan , Vincent Bernard , Justin Wong , Yuki Makino , Daniel B Swartzlander , Kimal I Rajapakshe , Jaewon J Lee , Adam Officer , Christian Max Schmidt , Howard H Wu , Courtney L Scaife , Kajsa E Affolter , Daniela Nachmanson , Matthew A Firpo , Michele Yip-Schneider , Andrew M Lowy , Olivier Harismendy , Subrata Sen , Anirban Maitra , Yasminka A Jakubek , Paola A Guerrero

The impact of pre-treatment smoking status on survival after chemoradiotherapy for locally advanced non-small-cell lung cancer.

Lung cancer (Amsterdam, Netherlands)

Avec: Neil D Wallace , Marliese Alexander , Jing Xie , David Ball , Fiona Hegi-Johnson , Nikki Plumridge , Shankar Siva , Mark Shaw , Susan Harden , Tom John , Ben Solomon , Ann Officer , Michael MacManus

Gαs is dispensable for β-arrestin coupling but dictates GRK selectivity and is predominant for gene expression regulation by β2-adrenergic receptor.

The Journal of biological chemistry

Avec: Valeria Burghi , Justine S Paradis , Adam Officer , Sendi Rafael Adame-Garcia , Xingyu Wu , Edda S F Matthees , Benjamin Barsi-Rhyne , Dana J Ramms , Lauren Clubb , Monica Acosta , Pablo Tamayo , Michel Bouvier , Asuka Inoue , Mark von Zastrow , Carsten Hoffmann , J Silvio Gutkind

The impact of transport, housing, and urban development interventions on older adults' mobility: A systematic review of experimental and quasi-experimental studies.

Journal of transport & health

Avec: Thiago Hérick de Sá , Daniele Sudsataya , Andra Fry , Nazak Salehi , Aishwarya Katiki , Megan Mcleod , Greg Rathmell , Jon Cylus , Louise Lafortune , Tine Buffel , Patty Doran , Alana Officer , Huseyin Naci

Ageism, Healthy Life Expectancy and Population Ageing: How Are They Related?

International journal of environmental research and public health

Avec: Alana Officer , Jotheeswaran Amuthavalli Thiyagarajan , Mira Leonie Schneiders , Paul Nash , Vânia de la Fuente-Núñez

Avant-garde: an automated data-driven DIA data curation tool.

Nature methods

Avec: Alvaro Sebastian Vaca Jacome , Ryan Peckner , Nicholas Shulman , Karsten Krug , Katherine C DeRuff , Adam Officer , Karen E Christianson , Brendan MacLean , Michael J MacCoss , Steven A Carr , Jacob D Jaffe

Direct reprogramming of oral epithelial progenitor cells to cancer stem cells at single cell resolution

bioRxiv : the preprint server for biology

Avec: Farhoud Faraji , Sydney I Ramirez , Lauren M Clubb , Kuniaki Sato , Paola Y Anguiano Quiroz , William M G Galloway , Zbigniew Mikulski , Thomas S Hoang , Kate Medetgul-Ernar , Pauline Marangoni , Kyle B Jones , Adam Officer , Alfredo A Molinolo , Kenneth Kim , Kanako Sakaguchi , Joseph A Califano , Quinton Smith , Ophir D Klein , Pablo Tamayo , J Silvio Gutkind

Interventions addressing functional abilities of older people in rural and remote areas: a scoping review of available evidence based on WHO functional ability domains.

BMC geriatrics

Avec: Ivy Yan Zhao , Jed Montayre , Angela Y M Leung , Jann Foster , Ariana Kong , Stephen Neville , Ramona Ludolph , Christopher Mikton , Alana Officer , Alex Molassiotis

Mutational profiling of micro-dissected pre-malignant lesions from archived specimens.

BMC medical genomics

Avec: Daniela Nachmanson , Joseph Steward , Huazhen Yao , Adam Officer , Eliza Jeong , Thomas J O'Keefe , Farnaz Hasteh , Kristen Jepsen , Gillian L Hirst , Laura J Esserman , Alexander D Borowsky , Olivier Harismendy

Real world outcomes in KRAS G12C mutation positive non-small cell lung cancer.

Lung cancer (Amsterdam, Netherlands)

Avec: Wanyuan Cui , Fanny Franchini , Marliese Alexander , Ann Officer , Hui-Li Wong , Maarten IJzerman , Jayesh Desai , Benjamin J Solomon

The breast pre-cancer atlas illustrates the molecular and micro-environmental diversity of ductal carcinoma in situ.

NPJ breast cancer

Avec: Daniela Nachmanson , Adam Officer , Hidetoshi Mori , Jonathan Gordon , Mark F Evans , Joseph Steward , Huazhen Yao , Thomas O'Keefe , Farnaz Hasteh , Gary S Stein , Kristen Jepsen , Donald L Weaver , Gillian L Hirst , Brian L Sprague , Laura J Esserman , Alexander D Borowsky , Janet L Stein , Olivier Harismendy

Systematic review on attitudes towards death and dying in adults 50 years and older living in countries with community transmission of COVID-19.

Archives of gerontology and geriatrics

Avec: Alana Officer , Sophie Pautex , Andreea Badache , Barbara Broers , Matthew Prina

YAP-Driven Malignant Reprogramming of Epithelial Stem Cells at Single Cell Resolution.

Research square

Avec: J Silvio Gutkind , Farhoud Faraji , Sydney Ramirez , Lauren Clubb , Kuniaki Sato , Paola Anguiano Quiroz , William Galloway , Zbigniew Mikulski , Thomas Hoang , Kate Medetgul-Ernar , Pauline Marangoni , Kyle Jones , Adam Officer , Alfredo Molinolo , Kenneth Kim , Kanako Sakaguchi , Joseph Califano , Quinton Smith , Ophir Klein , Pablo Tamayo

Stem-like breast cancer cells in the activated state resist genetic stress via TGFBI-ZEB1.

NPJ breast cancer

Avec: Qi Sun , Yufen Wang , Adam Officer , Brianna Pecknold , Garrett Lee , Olivier Harismendy , Jay S Desgrosellier

Measuring functional ability in healthy ageing: a nationwide cross-sectional survey in the Philippine older population.

BMJ open

Avec: Dario Moreno-Agostino , Matthew Prina , Kia-Chong Chua , Amuthavalli Thiyagarajan Jotheeswaran , Ritu Sadana , Alana Officer , Kaloyan Kamenov , Alarcos Cieza

Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds.

Scientific data

Avec: Deborah O Dele-Oni , Karen E Christianson , Shawn B Egri , Alvaro Sebastian Vaca Jacome , Katherine C DeRuff , James Mullahoo , Vagisha Sharma , Desiree Davison , Tak Ko , Michael Bula , Joel Blanchard , Jennie Z Young , Lev Litichevskiy , Xiaodong Lu , Daniel Lam , Jacob K Asiedu , Caidin Toder , Adam Officer , Ryan Peckner , Michael J MacCoss , Li-Huei Tsai , Steven A Carr , Malvina Papanastasiou , Jacob D Jaffe

Age-friendly interventions in rural and remote areas: A scoping review.

Australasian journal on ageing

Avec: Jed Montayre , Jann Foster , Ivy Yan Zhao , Ariana Kong , Angela Y M Leung , Alex Molassiotis , Alana Officer , Christopher Mikton , Stephen Neville

Tumor microenvironmental determinants of high-risk DCIS progression.

Research square

Avec: Alexander Borowsky , Alexa Glencer , Kirithiga Ramalingam , Nicole Schindler , Hidetoshi Mori , Parchi Ghule , Kyra Lee , Daniela Nachmanson , Adam Officer , Olivier Harismendy , Janet Stein , Gary Stein , Mark Evans , Donald Weaver , Christina Yau , Gillian Hirst , Michael Campbell , Laura Esserman

Réseau de co-auteurs

Olivier Harismendy 7 collaborations

Alana Officer 6 collaborations

Daniela Nachmanson 4 collaborations

Pablo Tamayo 3 collaborations

J Silvio Gutkind 3 collaborations

Marliese Alexander 2 collaborations

Ann Officer 2 collaborations

Lauren Clubb 2 collaborations

Alvaro Sebastian Vaca Jacome 2 collaborations

Ryan Peckner 2 collaborations

Katherine C DeRuff 2 collaborations

Karen E Christianson 2 collaborations

Michael J MacCoss 2 collaborations

Steven A Carr 2 collaborations

Jacob D Jaffe 2 collaborations

Farhoud Faraji 2 collaborations

Kuniaki Sato 2 collaborations

Zbigniew Mikulski 2 collaborations

Kate Medetgul-Ernar 2 collaborations

Pauline Marangoni 2 collaborations

Kenneth Kim 2 collaborations

Kanako Sakaguchi 2 collaborations

Quinton Smith 2 collaborations

Ivy Yan Zhao 2 collaborations

Jed Montayre 2 collaborations

Angela Y M Leung 2 collaborations

Jann Foster 2 collaborations

Ariana Kong 2 collaborations

Stephen Neville 2 collaborations

Christopher Mikton 2 collaborations

Alex Molassiotis 2 collaborations

Joseph Steward 2 collaborations

Huazhen Yao 2 collaborations

Farnaz Hasteh 2 collaborations

Kristen Jepsen 2 collaborations

Gillian L Hirst 2 collaborations

Laura J Esserman 2 collaborations

Alexander D Borowsky 2 collaborations

Hidetoshi Mori 2 collaborations

Matthew Prina 2 collaborations

Erick Armingol 1 collaboration

Nathan E Lewis 1 collaboration

Athanasios Papadas 1 collaboration

Gauri Deb 1 collaboration

Alexander Cicala 1 collaboration

Chelsea Hope 1 collaboration

Adam Pagenkopf 1 collaboration

Evan Flietner 1 collaboration

Zachary T Morrow 1 collaboration

Philip Emmerich 1 collaboration

Joshua Wiesner 1 collaboration

Garrett Arauz 1 collaboration

Varun Bansal 1 collaboration

Karla Esbona 1 collaboration

Christian M Capitini 1 collaboration

Kristina A Matkowskyj 1 collaboration

Dustin A Deming 1 collaboration

Katerina Politi 1 collaboration

Scott I Abrams 1 collaboration

Fotis Asimakopoulos 1 collaboration

Alexander Semaan 1 collaboration

Vincent Bernard 1 collaboration

Justin Wong 1 collaboration

Yuki Makino 1 collaboration

Daniel B Swartzlander 1 collaboration

Kimal I Rajapakshe 1 collaboration

Jaewon J Lee 1 collaboration

Christian Max Schmidt 1 collaboration

Howard H Wu 1 collaboration

Courtney L Scaife 1 collaboration

Kajsa E Affolter 1 collaboration

Matthew A Firpo 1 collaboration

Michele Yip-Schneider 1 collaboration

Andrew M Lowy 1 collaboration

Subrata Sen 1 collaboration

Anirban Maitra 1 collaboration

Yasminka A Jakubek 1 collaboration

Paola A Guerrero 1 collaboration

Neil D Wallace 1 collaboration

Jing Xie 1 collaboration

David Ball 1 collaboration

Fiona Hegi-Johnson 1 collaboration

Nikki Plumridge 1 collaboration

Shankar Siva 1 collaboration

Mark Shaw 1 collaboration

Susan Harden 1 collaboration

Tom John 1 collaboration

Ben Solomon 1 collaboration

Michael MacManus 1 collaboration

Valeria Burghi 1 collaboration

Justine S Paradis 1 collaboration

Sendi Rafael Adame-Garcia 1 collaboration

Xingyu Wu 1 collaboration

Edda S F Matthees 1 collaboration

Benjamin Barsi-Rhyne 1 collaboration

Dana J Ramms 1 collaboration

Monica Acosta 1 collaboration

Michel Bouvier 1 collaboration

Asuka Inoue 1 collaboration

Mark von Zastrow 1 collaboration

Carsten Hoffmann 1 collaboration

Thiago Hérick de Sá 1 collaboration

Daniele Sudsataya 1 collaboration

Andra Fry 1 collaboration

Nazak Salehi 1 collaboration

Aishwarya Katiki 1 collaboration

Megan Mcleod 1 collaboration

Greg Rathmell 1 collaboration

Jon Cylus 1 collaboration

Louise Lafortune 1 collaboration

Tine Buffel 1 collaboration

Patty Doran 1 collaboration

Huseyin Naci 1 collaboration

Jotheeswaran Amuthavalli Thiyagarajan 1 collaboration

Mira Leonie Schneiders 1 collaboration

Paul Nash 1 collaboration

Vânia de la Fuente-Núñez 1 collaboration

Nicholas Shulman 1 collaboration

Karsten Krug 1 collaboration

Brendan MacLean 1 collaboration

Sydney I Ramirez 1 collaboration

Lauren M Clubb 1 collaboration

Paola Y Anguiano Quiroz 1 collaboration

William M G Galloway 1 collaboration

Thomas S Hoang 1 collaboration

Kyle B Jones 1 collaboration

Alfredo A Molinolo 1 collaboration

Joseph A Califano 1 collaboration

Ophir D Klein 1 collaboration

Ramona Ludolph 1 collaboration

Eliza Jeong 1 collaboration

Thomas J O'Keefe 1 collaboration

Wanyuan Cui 1 collaboration

Fanny Franchini 1 collaboration

Hui-Li Wong 1 collaboration

Maarten IJzerman 1 collaboration

Jayesh Desai 1 collaboration

Benjamin J Solomon 1 collaboration

Jonathan Gordon 1 collaboration

Mark F Evans 1 collaboration

Thomas O'Keefe 1 collaboration

Gary S Stein 1 collaboration

Donald L Weaver 1 collaboration

Brian L Sprague 1 collaboration

Janet L Stein 1 collaboration

Sophie Pautex 1 collaboration

Andreea Badache 1 collaboration

Barbara Broers 1 collaboration

Sydney Ramirez 1 collaboration

Paola Anguiano Quiroz 1 collaboration

William Galloway 1 collaboration

Thomas Hoang 1 collaboration

Kyle Jones 1 collaboration

Alfredo Molinolo 1 collaboration

Joseph Califano 1 collaboration

Ophir Klein 1 collaboration

Qi Sun 1 collaboration

Yufen Wang 1 collaboration

Brianna Pecknold 1 collaboration

Garrett Lee 1 collaboration

Jay S Desgrosellier 1 collaboration

Dario Moreno-Agostino 1 collaboration

Kia-Chong Chua 1 collaboration

Amuthavalli Thiyagarajan Jotheeswaran 1 collaboration

Ritu Sadana 1 collaboration

Kaloyan Kamenov 1 collaboration

Alarcos Cieza 1 collaboration

Deborah O Dele-Oni 1 collaboration

Shawn B Egri 1 collaboration

James Mullahoo 1 collaboration

Vagisha Sharma 1 collaboration

Desiree Davison 1 collaboration

Tak Ko 1 collaboration

Michael Bula 1 collaboration

Joel Blanchard 1 collaboration

Jennie Z Young 1 collaboration

Lev Litichevskiy 1 collaboration

Xiaodong Lu 1 collaboration

Daniel Lam 1 collaboration

Jacob K Asiedu 1 collaboration

Caidin Toder 1 collaboration

Li-Huei Tsai 1 collaboration

Malvina Papanastasiou 1 collaboration

Alexander Borowsky 1 collaboration

Alexa Glencer 1 collaboration

Kirithiga Ramalingam 1 collaboration

Nicole Schindler 1 collaboration

Parchi Ghule 1 collaboration

Kyra Lee 1 collaboration

Janet Stein 1 collaboration

Gary Stein 1 collaboration

Mark Evans 1 collaboration

Donald Weaver 1 collaboration

Christina Yau 1 collaboration

Gillian Hirst 1 collaboration

Michael Campbell 1 collaboration

Laura Esserman 1 collaboration